Publications:
Peer-reviewed
journal papers:
David J Bertioli, Marcio C Moretzsohn, Lene H Madsen, Niels Sandal, Soraya CM Leal-Bertioli, Patricia
M Guimaraes, Birgit K Hougaard,
Jakob Fredslund, Leif Schauser, Anna M Nielsen, Shusei Sato, Satoshi Tabata, Steven B Cannon, Jens Stougaard
An
analysis of synteny of Arachis
with Lotus and Medicago sheds new light on the
structure, stability and evolution of legume genomes
BMC Genomics 2009, 10:45
Jakob Fredslund
DATFAP: A Database of
Primers and Homology Alignments for Transcription Factors from 13 Plant Species
BMC
Genomics 2008, 9:140
Hougaard
BK, Madsen LH, Sandal N, Moretzsohn MC, Fredslund J, Schauser L, Nielsen
AM, Rohde T, Sato S, Tabata S, Bertioli
DJ, Stougaard J
Legume anchor markers link syntenic
regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and
Arachis
Genetics
179:2299-2312, August
2008.
Daniel
Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary
Andersen, Victor Markowitz, Philip Hugenholtz
Automated assignment
of groups in large phylogenetic trees using GRUNT: Grouping, Ungrouping, Naming
Tool
BMC Bioinformatics 2007, 8:402
Jakob Fredslund, Mette Lange
primique: automatic design of specific PCR primers
for each sequence in a family
BMC
Bioinformatics 2007, 8:369
Jakob
Fredslund
PHY∙FI:
fast and easy online creation and manipulation of phylogeny color figures [highly accessed]
BMC
Bioinformatics 2006, 7:315
Jakob Fredslund,
Lene H. Madsen, Birgit K. Hougaard,
Anna Marie Nielsen, David Bertioli, Niels Sandal, Jens Stougaard,
Leif Schauser
A general pipeline for
the development of anchor markers for comparative genomics in plants
BMC
Genomics 2006, 7:207
Jakob Fredslund,
Lene H. Madsen, Birgit K. Hougaard,
Niels Sandal, Jens Stougaard,
David Bertioli, Leif Schauser
GeMprospector - Online Design of Cross-Species Genetic
Marker Candidates in Legumes and Grasses
Nucleic
Acids Research 2006 34 (Web Server issue): W670-W675
Jakob Fredslund, Leif Schauser,
Lene Heegard Madsen, Niels Sandal, Jens Stougaard,
PriFi - Using a Multiple Alignment of Related
Sequences to Find Primers for Amplification of Homologs,
Nucleic
Acids Research 2005 33(Web Server issue):W516-W520; doi:10.1093/nar/gki425
Jakob Fredslund, Maja J Matarić,
A General Algorithm
for Robot Formations Using Local Sensing and Minimal Communication,
In
IEEE Transactions on Robotics and Automation, Special Issue on Multi Robot
Systems, 18(5):837-846, October 2002.
Lola D. Cañamero, Jakob
Fredslund,
I Show You How I Like
You: Emotional Human-Robot Interaction through Facial Expression and Tactile
Stimulation,
In
IEEE Transactions on Systems, Man, and Cybernetics, Part A, vol. 31, no. 5, pp.
454-459, September 2001.
Book
chapter:
Ole
Caprani, Jakob Fredslund, Jens Jacobsen, Line Kramhøft,
Rasmus B. Lunding, Jørgen Møller Ilsø,
and Mads Wahlberg,
Evolution of Computer
Bugs – an
Interdisciplinary Team Work,
In Behind
the Scenes of Multimedia Production, Kim H. Madsen, Lars. Qvortrup, ed.
Springer-Verlag, New York, 2003.
Peer-reviewed
conference papers:
David
Bertioli, Marcio Moretzsohn, Soraya Leal Bertioli, Patricia Guimarães, Lene
Madsen, Jakob Fredslund, Birgit Hougaard, Leif Schauser, Niels Sandal, Satoshi
Tabata, Jens Stougaard
Comparative mapping of
Arachis, a basal genus in the Papilionoideae, with the model legumes Lotus
Japonicus and Medicago Truncatula
Submitted
to the 6th European Conference on Grain Legumes, Lisbon, Portugal.
Leif Schauser, Jakob Fredslund,
Lene Heegard Madsen, Niels Sandal, Jens Stougaard,
A computational
pipeline towards the development of comparative anchor tagged sequence (CATS)
markers,
In Proceedings of the International Grassland Congress
(IGC), 2005. In Humphrey MO (Ed) Wageningen Academic Publishers, pp. 73-81.
Jakob Fredslund,
Jotun Hein,
A large version
of the small parsimony problem.
In Proceedings of the 3rd workshop on
algorithms in bioinformatics (WABI 2003), pp. 417-432. September 15th-19th, 2003, Budapest, Hungary.
Jakob Fredslund,
Maja J Matarić,
Huey, Dewey, Louie,
and GUI – Commanding Robot Formations,
In Proceedings of the 2002 IEEE International
Conference on Robotics and Automation (ICRA'02), May 11–15, 2002, Washington,
D.C., USA.
Jakob Fredslund, Maja J Matarić,
Robots in Formation
Using Local Information,
In
Proceedings of the 7th International Conference on Intelligent Autonomous
Systems (IAS-7), Marina del Rey, California, USA, March 25–27, 2002.
Jakob Fredslund, Maja J Matarić,
Robot Formations Using
Only Local Sensing and Control,
In
Proceedings of the IEEE International Symposium on Computational Intelligence
in Robotics and Automation (CIRA-01) Banff, Alberta, Canada, July 29–August 1,
2001.
Lola D. Cañamero, Jakob
Fredslund,
How Does It Feel?
Emotional Interaction with a Humanoid LEGO Robot,
In
K. Dautenhahn, ed., Socially Intelligent Agents: The
Human in the
Ola: What Goes Up,
Must Fall Down,
In Proceedings of Artificial Life and
Robotics 1999 (AROB'99), pp. I-9 – I-15, ISAROB, Oita, 1999.
Posters:
David
Bertioli, Niels Sandal, Lene Madsen, Jakob Fredslund, Birgit Hougaard, Leif
Schauser, Anna Marie Nielsen, Jens Stougaard, Satoshi Tabata, Marcio
Moretzsohn, Soraya Leal Bertioli, Patricia Guimarães
Comparative mapping of
peanut (Arachis hypogaea) with the model legumes Lotus Japonicus and Medicago
Truncatula
Generation
Challenge Program General Meeting on Synteny, 2007.
Hougaard, B.K., Madsen, L.H., Fredslund, J., Schauser, L.,
Nielsen, A.M., Sandal, N.N., Rohde, T., Jacobsen, R.H., Stougaard,
J. 2007,
Development of Legume
Anchor Markers: a bioinformatic driven tool for
genetic mapping and comparative genomics
Presented
at the Plant Biotech
Hougaard, B.K., Madsen, L.H., Fredslund, J., Schauser, L.,
Nielsen, A.M., Sandal, N.N., Rohde, T., Jacobsen, R.H., Bertioli,
D.J., Tohme, J., Blair, M., Stougaard,
J. 2006, Development of Legume Anchor
Markers: a bioinformatic driven tool for genetic
mapping and comparative genomics
Presented
at the 7th European Nitrogen Fixation Conference,
Hougaard, B.K., Madsen, L.H., Fredslund, J., Schauser, L.,
Nielsen, A.M., Sandal, N.N., Rohde, T., Jacobsen, R.H., Bertioli,
D.J., Tohme, J., Blair, M., Stougaard,
J. 2006, Development of Legume Anchor
Markers: a bioinformatic driven tool for genetic
mapping and comparative genomics
Presented at Crop Genomics, Trait Analysis
and Breeding, Hinxton, 8.11.2006 - 11.11.2006.
Jakob Fredslund,
Jotun Hein,
Determining the
Optimal Set of Indels Explaining the Gaps in a
Multiple Alignment Using Affine Gap Cost Function
Presented at the International Conference on
Research in Computational Molecular Biology (RECOMB 2003) April 10th
– 13th, Berlin, Germany.
Jakob
Fredslund,
Teaching a new dog old
tricks – the
Assumption Architecture,
In
Proceedings of the Learning'00 Workshop, Department of Technology and
Communication, Universidad Carlos III, Madrid, Spain, October 25–27, 2000.
Other:
Jakob Fredslund,
Superjordnøddernes
Hemmelighed
Aktuel Naturvidenskab, 6:12-15, December
2005
Jakob Fredslund, Maja J Matarić,
Robot Formations,
In AliveArt Handbook,
Educational CD-ROM, Elisa Giaccardi and Luigi Pagliarini, ed., Limited Edition.
Interview in the promotion film for the Natural
Sciences Den Hotteste
Forskning (2003, director Mette
Thybo), distributed on schools nation-wide.
http://www.sdu.dk/Nat/fak/nyheder/show_news.php?id=73&lang=dk
Appearance
of my robot Feelix in two children’s books about
robots: Robotics (cool science), Helena Domaine,
Lerner Publications (ISBN 0822521121), and Robot
(eyewitness), Rodger Francis Bridgman, Dorling Kindersley (ISBN
0756602548).
Jakob
Fredslund,
Simplicity Applied in
Projects Involving Embodied, Autonomous Robots
PhD Dissertation, Department of Computer
Science, Aarhus University, Denmark, 2002.
Jakob
Fredslund,
The Assumption
Architecture, A Training System for LEGO robots,
Progress Report, Department of Computer
Science, Aarhus University, Denmark, 1999.